This comes after Israel’s attacks on southern Lebanon that have killed at least 32 people.
The ministry said it was in response to the blatant violation of Iran’s national sovereignty and territorial integrity.
Mr Khamenei emerged following the assassination of his father, Ayatollah Ali Khamenei.
The Gulf states including U.A.E, Bahrain and Kuwait have closed their airspaces to avert future attacks.
One of the top generals of Iran’s Islamic Revolutionary Guard Corps (IRGC), Esmail Qa’ani, has reappeared in the public eye.
The airstrike, which occurred earlier on Monday, also reportedly killed several others.
It was reported that three explosive drones attempted to strike the base, housing the federation forces tasked with training.
U.S. President Joe Biden had ordered Sunday’s action to make it clear that the U.S. was defending itself, its personnel, and its interests.
