The Flamingos, coached by Akeem Busari, have, with the victory, set up a third and final qualifying round tie against Benin Republic.
Captain Chidi Harmony opened the scoring floodgates with a hat-trick in the first 39 minutes.
Nigeria defeated Germany 3-2 on penalties after the regulation time ended in a dramatic 3-3 draw.
Nigeria defeated Chile 2-1 to scale through to the quarterfinals of the competition.
Nigeria defeated bronze medalist of the last edition, New Zealand to record their first points of the tournament.
Germany pulled off a comeback to beat Nigeria 2-1 on Tuesday evening.
