Mr Emmanuel noted inconsistent compliance among operators.
The Lagos State Waterways Authority has launched Africa’s first ferry safety development and mentoring programme to enhance safety, efficiency and professionalism.
He directed all operators to resume normal services in line with their approved schedules.
Daniel Danladi was identified as a colleague of the first victim.
The LASWA’s general manager, Oluwadamilola Emmanuel, confirmed this in a statement on Thursday.
Mr Emmanuel noted that LASWA mission was to revolutionise water transportation in Lagos.
Mr Emmanuel said the agency would continue to synergize with other agencies to secure the waterways.
The ferry was transporting 17 passengers en route to Ebute Ero from Ikorodu in Lagos.
The Lagos government accused the boat driver of breaking waterways rules by sailing late in the evening without providing passengers with life jackets.
Two female passengers died after a boat mishap in Ikorodu, Lagos State on Wednesday.
