Mr Oyedepo told the court that based on the plea bargain talks between parties, the prosecution filed an amended charge.
She is arraigned alongside Gloria Odita on a five-count charge bordering on alleged fraud, obtaining by false pretence, and criminal breach of trust.
The botched case was the last serious attempt by the Nigerian government to impose accountability on organisations and individuals with suspected ties to the 2011 deal.
Justice Inyang Ekwo could not hear the matter, which was number three on the cause list.
I understand that, unlike those on Facebook and Twitter, some of you on Instagram are young, sensitive, and have a weird relationship with history.
The former minister said apart from not being served with the charge, she had never been subjected to any investigation by the Nigeria Police Force.
The judge, in a short ruling, ordered Mr Mohammed to be handed over to the anti-corruption agency for thorough investigation.
The former Aviation Minister and others are being prosecuted by the EFCC on alleged N5 billion fraud.
Justice Inyang Ekwo, in a judgement, dismissed the suit for being status barred.
“Our people cannot leave what they know to what they don’t know. We are not jittery and we are more than capable to win.”
